25a4687611516ae4870c59071127983fd7baa9ef
10
Commits
| Author | SHA1 | Message | Date | |
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 amosblomqvist
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4985b6f9fa |
chains-primary: stored chains replace typed edges; edges become a derived view
Owner rulings 2026-09-30: reasoning chains are the stored truth; the graph canvas renders a lossy derived image. No migration, no backcompat — old graph data was wiped. - contracts: GraphChain (arg_-minted id, premises, conclusion) replaces typed edges; GraphEdge survives only as the untyped derived arrow; GraphSnapshot carries stored chains; supports edges retired entirely - store: chains.jsonl ledger (edges.jsonl purged at load alongside legacy events.jsonl); readChains/appendChain seam; merge dedupes by (sorted premises, conclusion), re-assertions append under the same arg_ id - core: deriveView mints implication nodes (name ⟹, statement via formatChainLine) plus premise→imp→conclusion arrows; clusters stay proposition-only (birthSessionPartition); chainsForSelection now groups STORED chains (chain rides iff every member selected) — independent arguments for one conclusion never union; chainsToGraph/chainsToEdges die - extraction: extractor submits chains natively (expandFindings deleted); auditor receives propositions only; supports fan-out gone - deletion: full death of a proposition kills every referencing chain; arg_-prefixed node deletes kill that chain; chainsRemoved stats - UI: every arrow renders the ⟹ double shaft; supports toggle + thickness slider and detail-card edge sections deleted (card keeps name + proposition); chain table + practice pipeline read stored chains - tests: 1188 green across the new seams |
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amosblomqvist
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1b50013551 |
extraction cleanup: events ledger dies, markdown source view, auditor-as-linker (2026-09-27 rulings)
The graph becomes raw reasoning chains only. Quiz outcomes and understanding observations are no longer formalized; assessment moves to the future practice module. Events ledger removed end-to-end: LedgerEvent/LedgerEventKind/ UnderstandingLevel/ExtractionAttribution/AuditResult.dropped and snapshot nodeObservations deleted from contracts; quizEvent builder and the events step of mergeFindings gone; appendEvent/readEvents dropped from the port and store; LEDGER_FILES loses events.jsonl with a one-time purge of a stale file next to the nodes ledger; graph-deletion and the delete dialog lose event purge + quiz-answer impact counts; GraphSessionProposition becomes a pure birth list. Whole-session markdown source view: new core/session-markdown.ts is the shared formatting engine (id-anchored speaker blocks, quiz/ recall/question blocks, tool one-liners) — the extractor's prompt view and the future user-facing export render from one engine. Coverage fingerprints deliberately stay on the old line format (content-hash semantics; re-formatting never re-opens covered history). The whole session goes to the extractor — no phase cut. Auditor refocused as the identity linker: never sees the source; explores the graph via new auditor-specific tools in agent/tools/graph.ts (find — glob over name/statement/aliases; list_sessions; list_propositions with full statement text; no timestamps) instead of an injected full-graph dump; equivalence bias — paraphrases merge, only genuinely distinct propositions stay apart; no drop channel, the extractor is fully trusted; may draw bridging edges (typed follows/supports) between existing nodes and the batch, resolved by the merger with chat-scoped message-less provenance. Agentic loop, maxTurns 16. UI: the node detail card gains an edges section above the sessions list (follows-from / supported-by / what-follows / what-it-supports, rendered only when present, click-to-select neighbors); the understanding-note chips are gone. Prober list_propositions reworded to what a session covered — names only, no levels. docs/architecture.md + README updated to the as-built pipeline. Gates: typecheck, 1059/1059, lint, build. |
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amosblomqvist
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2e9fd01c0c |
Extraction-UX data layer: the chunk budget becomes a graph setting; the chat view gets a per-session coverage read
Owner-locked extraction-UX redesign (dispatch 2026-09-24), part 1 (data
layer; the UI chunk follows).
THRESHOLD -> SETTING
- config.ts's EXTRACTION.chunkTokens dies; the default moves into
FACTORY_SETTINGS.graph.extractionChunkTokens (4096, the old constant's
value). GraphSettings gains the optional field, Required at resolution
via the standard ?? FACTORY pattern — pre-redesign records resolve the
default cleanly.
- FLOOR 500 (the implementer's call, documented on the field): every run
pays the graph-carrying prompt overhead out of the write channel's
money — a smaller budget fires penny-batches that cost more per
extracted token than the content is worth. The sanitizer CLAMPS up
(bd68486 clamp-never-reject discipline: fractions floor, junk drops);
the settings PUT REJECTS below-floor with the rationale in the message.
No ceiling: a large budget just delays extraction — the user's stated
cost/thoroughness tradeoff, not a misconfiguration to police.
- The trigger (turn-service.triggerExtraction) takes the budget as a
parameter — chat-handler passes effective.graph.extractionChunkTokens,
the fresh per-turn read, same as every other gate.
- The pipeline's BATCH side threads through the same number:
ExtractionPipelineDeps gains an OPTIONAL getChunkTokens getter with the
factory default (Teacher's 24 test fixtures stay untouched; the two
call-site lines inside extraction.ts are the only cross-band edits,
flagged). chat-handler + backfill/import-notes wire the live
effectiveSettings — trigger and batches share one budget, always.
PER-SESSION COVERAGE READ
- sessionCoverage(chatId) (server/chats.ts): the chat view's ring-meter
block — totalMessages/coveredCount/uncoveredCount/coveredTokens/
uncoveredTokens (the same coverageOf derivation /api/graph/coverage
serves, scoped to one chat), running (chat-kind extraction registered
for this id), and lastFoldedAt (the chat's newest coverage row's fold
— a cheap single pass; null before any fold). GET /api/chats/[id]
carries it as coverage: {...}; unknown chat -> null (the route 404s
first).
- /api/graph/coverage (the all-sessions list) compiles untouched — the
per-session read is a scoping of it, not a supersession; the UI's
sidebar/ring chunk decides which surface it consumes.
Tests: factory/sanitizer pins (clamp-up, fraction-floor, junk-drop),
resolution pins (absent -> 4096, stored 2000 wins), settings-body pins
(valid/absent/fraction/below-floor 400/junk 400), sessionCoverage pins
(derived split, newest-fold scoping, cross-session isolation, running via
the registry, null on unknown chat). 893/893.
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amosblomqvist
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d1b46132b9 |
Wave 7 close-out: the embedding ledger seam dies; notes birth via mapping lines
Part 1 — the ledger + remnants interlude (master-dispatched, owner ruling 2026-09-23: nothing configures the graph beyond chat models): - The embedding ledger surface is gone: readEmbeddings/writeEmbeddings ports, the EmbeddingsLedger contract, EMBEDDINGS_FILE (config, store impls, graphRevision source list), and graph-deletion's vector-pruning step. On-disk data files stay untouched (inert history). - The extraction embedder seam dies wholesale: ExtractionPipelineDeps drops the embedder dep (chat-handler + backfill/import-notes stubs go with it), the 'embedding' phase leaves ExtractionPhase, the usage capture/persist helpers die, and stages.embedding leaves ExtractionRunUsage (historical records keep their shape — reads are lenient). Extraction is two stages again, like the local-embedder era. - Consumer-less remnants: latestQuizOutcomes + QUIZ_EVENT_KINDS, clusterContentId, matchClusterLabelings + Community + ClusterLabeling, the readClusterLabels/appendClusterLabel port seams + store impls + LEDGER_FILES.clusterLabels. NamingRunUsage/readNamingRuns STAY (standing ruling — the cost pill renders historical naming spend); clusterHue + MIN_CLUSTER_SIZE stay (live). - The 'labeler' role dies: BACKGROUND_MODEL_ROLES, ROLE_SLOT, ModelRole, the catalog pin projections, and the UI roster strings. RolePins keys shrink with the union. The notes birth fallback (owner-approved 2026-09-23, surfaced by the interlude's live smoke: production notes imports create provenance-EMPTY nodes (importNotes passes messages: null — the file's anchor is the mapping line), so the provenance-only birth rule left every imported file unclustered and invisible to the prober's session list, against the locked file-birth ruling. A provenance-empty node now births under its FIRST mapping line's chatId (ledger order); only notes-born nodes ever hit the fallback (chat nodes always carry provenance; a re-encountered node's link-append re-opens the provenance rule). Deletion-safe: mapping lines of deleted chats are stripped alongside their provenance. Live-verified on port 3004: a fresh notes import clusters under its src_ id with the file path as the label, end to end with no embedder. 845/845 tests, typecheck/lint/build green. EOF ) |
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amosblomqvist
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a72753b059 |
Merge branch 'feat/platform'
# Conflicts: # scripts/import-notes.ts |
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amosblomqvist
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c86430e8bf |
Wave 7 chunk B: remove the embeddings machinery — the ladder collapses
The owner's wave-7 ruling: embeddings die entirely (git history is the
stash); clustering is birth-session derived (chunk A, 950ddfd), labels
are session names, and the prober's graph tools replace injection.
- settings: GraphSettings collapses to { enabled } — embedding,
embeddingModel, clustering, labeling all die. Migration story: stale
record keys are UNREAD and dropped by the sanitizer's reconstruction;
the next graph-section PUT (replace-whole) persists the collapsed
shape. The settings-panel GraphSection renders one master row.
- deleted: src/server/embeddings.ts (adapters, resolveEmbeddingPortFor,
embedNewNodes, embeddingPort, embeddingModelCatalog), the
GET /api/models/embeddings route, scripts/embed-graph.ts, tests for
all three, and the /api/models/embeddings picker surfaces in the UI.
- prices: EMBEDDING_PRICES overlay + callCost fallback die. cost-summary:
the embedding stage fold dies — back to three stages (extraction/
audit/naming) per the owner ruling; historical stages.embedding spend
in old run records is simply not displayed.
- ports: EmbeddingPort/EmbeddingResult/EmbeddingTask die. The embeddings
LEDGER surface (readEmbeddings/writeEmbeddings + EmbeddingsLedger +
EMBEDDINGS_FILE + graph-deletion's vector pruning) STAYS — inert data,
kept only so graph-context.ts compiles until Teacher's pass removes
it; the seam dies in the follow-up interlude.
- chat-handler (approved cross-lane unwiring, wave-6 precedent): the
extraction pipeline's embedder becomes a documented no-op (nothing
embedded, nothing spent, ledger untouched) until Teacher's pass
removes the phase; the graph-context injection dispatch gate, the
graphContext deps wiring, the setContextRespawn seam, and
turn-service's triggerGraphContext are gone — injection is dead
code pending Teacher's file deletions.
- scripts: backfill-graph/import-notes pass the same no-op embedder;
replay-layout derives clusters from birthSessionPartition (the same
partition the real settle uses) instead of the embeddings ledger.
- settings-body: parseGraphSettingsBody reads the master switch only —
old-shape keys in a body are ignored, not rejected; bad shapes 400.
- next.config: the @huggingface tracing-exclusion guards die with the
last reference.
Cross-lane flags: extraction.ts/graph-context.ts keep stale embed
comments + the embed phase until Teacher's full pass (their parallel
interlude owns those files — zero overlap kept by design);
semantic-clusters.ts + its test stay one more round (extraction.test.ts,
Teacher's file, still imports it — they delete it with the namer cases);
ChatSettings.graphContextTokens + the graph-context-control UI stay
until Teacher+UI.
Gates: tsc clean, eslint clean, 885/885 tests, build compiles.
Live-verified on the port-3004 dev tree: PUT /api/settings/graph with
dead keys collapses on write, bad shapes 400, GET reads {enabled: true},
/api/models/embeddings 404s.
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amosblomqvist
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078635e61c |
feat(extraction): kill the dead LLM cluster-namer — session names own the labels now
Wave 7 chunk A (950ddfd) replaced semantic clustering with birth-session clusters labeled by session names — the LLM namer became dead code, but extraction still called it, minting naming runs nobody reads on every merge. Real model spend wasted per extraction. Removed (agent band): - src/agent/subagents/cluster-namer.ts — the naming sub-agent, deleted whole (refreshClusterLabels, clusterNamingSettled, the naming loop). - extraction.ts: both post-merge garnish blocks (chat + notes paths), the labeler test seam on ExtractionModels, and the import. The labeler role's only consumer is gone; the 'labeler' entry in BACKGROUND_MODEL_ROLES/ROLE_SLOT (core band) is now consumer-less — flagged to Platform, not crossed. - scripts/import-notes.ts: the settle-before-exit line + the named- clusters count in the summary. - tests: the cluster-naming describe (naming + failure-non-fatal tests) and the dead CLUSTER_* fixtures; the labeler-less BYOK test repurposed as the kill pin — a merge mints NO naming runs and NO label records. NOT touched (flagged, outside the agent band): matchClusterLabelings (core/clusters.ts), clusterContentId (core/graph.ts — now consumer- less), the appendClusterLabel/readClusterLabels port seams + store impls + ClusterLabeling type (store/core band), tests/clusters.test.ts's matchClusterLabelings describe. Cost-summary's naming stage untouched per Platform's ruling (historical spend display reads readNamingRuns, which stays live). Gates: typecheck, 921/921, lint, build. |
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amosblomqvist
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f5edc7f0a5 |
Semantic topic clusters: local embeddings replace Louvain
Louvain only ever found the reasoning chains (the graph is disconnected by nature — every connected component became its own cluster) and edge-orphans could never join anything. Clusters are now RELATED TOPICS: propositions grouped by meaning. - Embedder (src/server/embeddings.ts): in-process transformers.js v4 running EmbeddingGemma-300M q8 (MTEB 68.4, ~300MB one-time download), MRL-truncated to 512d, "title: none | text:" prefix on 100% of inputs, L2-normalized so cosine = dot. Model/dim mismatch voids the ledger (full re-embed). Injected at the composition root — the agent layer never imports the server layer (architecture law). - Ledger (data/graph/embeddings.json): model + dim + vectors + the persisted cluster partition. Reclustering runs at the END of every embedding batch (post-merge hook, both front doors) — never per read (the agglomerative pass is ~1.5s at 338 nodes). - Clustering (src/core/semantic-clusters.ts): hand-rolled average-linkage agglomerative over cosine (npm HDBSCAN is an abandoned alpha). Stragglers stay singletons by default; attachStragglers is the all-in toggle. Threshold 0.60 swept on the real graph: 26 topics, 74/90 edge-orphans land in real topics, 10 stragglers. - Consumers (snapshot, settle, namer, replay) read the persisted partition — one cluster concept everywhere; core-survival label matching unchanged (20/26 topics kept labels). - Louvain retired: detectCommunities + graphology* deps deleted (graphology-louvain had leaked into the client bundle since the clusters wave); scripts/bench-graph.ts (dead FA2 bench) removed. - scripts/embed-graph.ts: backfill/cold-start (338 nodes in 150s including the one-time model download). |
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amosblomqvist
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f0267a5fd9 |
Clusters phases B+C: labeling records, the naming call, snapshot payload
Core-survival labelings (vision section 1, DECIDED 2026-09-13): ClusterLabeling records in a new append-only ledger (data/graph/cluster-labels.jsonl), immutable, id = clu_ + sha256 of the sorted core so re-naming races and re-runs dedupe at the store seam. matchClusterLabelings (core/clusters.ts, pure): a community keeps a record's label while at least half its core survives in it; both sides single-successor (a split keeps one name; greedy by overlap, ties to the newer record). The namer (src/agent/subagents/cluster-namer.ts): ONE singular cheap LLM call (new 'labeler' role, glm-flash/low) names every new/changed community at once, given member names + statements (capped at 12 members per cluster). refreshClusterLabels runs POST-EXTRACTION (user-decided) from both front doors, fire-and-forget — naming failure never fails the run; refreshes serialize behind a chain so parallel imports never mint duplicate labels. import-notes.ts awaits clusterNamingSettled before exit. Payload: GraphSnapshot.clusters (>= MIN_CLUSTER_SIZE 3) joins detection with labelings at read time — claimed clusters carry the record's label and id; unlabeled ones carry a member-hash id and null label. Detection is deterministic so no memo in v1 (ms at current scale; revisit at vault scale). Tests (372/372): matcher half-rule/split/merge/greedy/tie cases; naming end-to-end through importNotes (one call, one record, claim on re-refresh), naming failure non-fatal; snapshot derivation with labeling join; 11 test pipelines now pin an explicit labeler seam. |
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amosblomqvist
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543cf33789 |
Notes front door: format-agnostic import into the graph pipeline
The same extractor→auditor→merger pipeline now runs over raw personal
notes in arbitrary formats (vision §1, DECIDED 2026-09-13):
- NotesSource records (data/graph/sources.json, deterministic id from
path hash → idempotent re-imports) play the chatId role in mappings,
checkpoints, and observation events; usage lands on the source record
(appendSourceUsage, idempotent per startedAt, kept across upserts).
- mergeFindings is chat-store-free: callers pass MergeSource
{messages, foldedAt} — sessions pass the chat record, notes pass
messages:null (no quiz-event rebuild; a deterministic rebuild needs
structured quiz tool parts).
- Second extractor prompt (NOTES_EXTRACTOR_INSTRUCTIONS) for general-
purpose extraction; understanding judges the AUTHOR's grasp. Auditor
wording input-agnostic. extract/audit share one generic runSubmitAgent.
- graphSnapshot.fileSources (srcId→filePath); notes sources render as
static path entries in the detail card (FileTextIcon, never a link).
- One shared pipeline instance (exported from chat-handler): same
single-flight registry, live status chips (label = file path), usage
accounting, and true abort for both front doors.
- Transport: POST /api/graph/import (multipart, 3-wide worker pool) +
Import notes… button in the graph view; scripts/import-notes.ts for
batch runs (concurrency 4).
- real-data-extraction/ gitignored (raw import sources never committed).
355/355 tests; typecheck, lint, build green.
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