Louvain only ever found the reasoning chains (the graph is disconnected by nature — every connected component became its own cluster) and edge-orphans could never join anything. Clusters are now RELATED TOPICS: propositions grouped by meaning. - Embedder (src/server/embeddings.ts): in-process transformers.js v4 running EmbeddingGemma-300M q8 (MTEB 68.4, ~300MB one-time download), MRL-truncated to 512d, "title: none | text:" prefix on 100% of inputs, L2-normalized so cosine = dot. Model/dim mismatch voids the ledger (full re-embed). Injected at the composition root — the agent layer never imports the server layer (architecture law). - Ledger (data/graph/embeddings.json): model + dim + vectors + the persisted cluster partition. Reclustering runs at the END of every embedding batch (post-merge hook, both front doors) — never per read (the agglomerative pass is ~1.5s at 338 nodes). - Clustering (src/core/semantic-clusters.ts): hand-rolled average-linkage agglomerative over cosine (npm HDBSCAN is an abandoned alpha). Stragglers stay singletons by default; attachStragglers is the all-in toggle. Threshold 0.60 swept on the real graph: 26 topics, 74/90 edge-orphans land in real topics, 10 stragglers. - Consumers (snapshot, settle, namer, replay) read the persisted partition — one cluster concept everywhere; core-survival label matching unchanged (20/26 topics kept labels). - Louvain retired: detectCommunities + graphology* deps deleted (graphology-louvain had leaked into the client bundle since the clusters wave); scripts/bench-graph.ts (dead FA2 bench) removed. - scripts/embed-graph.ts: backfill/cold-start (338 nodes in 150s including the one-time model download).
119 lines
4.3 KiB
TypeScript
119 lines
4.3 KiB
TypeScript
/**
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* Semantic topic clustering (the Louvain REPLACEMENT, DECIDED
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* 2026-09-13): average-linkage agglomerative clustering over the
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* embedding ledger — related TOPICS, not reasoning chains. Pure and
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* deterministic, so these tests are exact.
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*/
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import { strict as assert } from "node:assert";
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import { describe, test } from "node:test";
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import { semanticClusters, SEMANTIC_SIM_THRESHOLD, cosineSimilarity } from "../src/core/semantic-clusters.ts";
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/** Two clearly-related one-hot-ish vectors (high cosine similarity). */
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function near(vec: number[], target: number[], amount = 0.2): number[] {
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let dot = 0;
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for (let i = 0; i < vec.length; i++) dot += vec[i]! * target[i]!;
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const mixed = vec.map((x, i) => x + amount * target[i]!);
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let mag = 0;
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for (const x of mixed) mag += x * x;
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mag = Math.sqrt(mag);
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return mixed.map((x) => x / mag);
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}
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function axis(dim: number, k: number): number[] {
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return Array.from({ length: dim }, (_, i) => (i === k ? 1 : 0));
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}
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describe("cosineSimilarity", () => {
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test("identical unit vectors → 1; orthogonal → 0; defensive normalization", () => {
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const a = axis(4, 0);
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const b = axis(4, 1);
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assert.ok(cosineSimilarity(a, a) > 0.999);
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assert.ok(Math.abs(cosineSimilarity(a, b)) < 1e-9);
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// Unnormalized twins still match.
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assert.ok(cosineSimilarity([3, 0], [5, 0]) > 0.999);
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});
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});
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describe("semanticClusters", () => {
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test("empty ledger: zero clusters (nothing embedded yet)", () => {
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assert.deepEqual(semanticClusters({}), []);
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});
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test("related vectors merge; distant ones stay separate (threshold)", () => {
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const dim = 8;
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const topicA = axis(dim, 0);
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const topicB = axis(dim, 1);
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const vectors = {
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a1: near(topicA, topicB, 0.1),
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a2: near(topicA, topicB, 0.15),
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a3: near(topicA, topicB, 0.05),
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b1: near(topicB, topicA, 0.1),
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b2: near(topicB, topicA, 0.12),
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};
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const clusters = semanticClusters(vectors);
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// Both topics form; average-linkage similarity within each is well
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// above the default threshold, across is well below.
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const big = clusters.filter((c) => c.members.length >= 2);
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assert.equal(big.length, 2);
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assert.deepEqual(
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big.map((c) => c.members.sort()).sort((x, y) => x[0]!.localeCompare(y[0]!)),
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[["a1", "a2", "a3"], ["b1", "b2"]],
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);
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});
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test("threshold is the granularity knob: higher splits, lower merges", () => {
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const dim = 6;
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const vectors = {
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x: near(axis(dim, 0), axis(dim, 1), 0.3),
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y: near(axis(dim, 1), axis(dim, 0), 0.3),
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};
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// Similarity ~0.72: merges below that, splits above.
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const sim = cosineSimilarity(vectors.x!, vectors.y!);
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assert.equal(semanticClusters(vectors, { similarityThreshold: sim - 0.01 }).length, 1);
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assert.equal(semanticClusters(vectors, { similarityThreshold: sim + 0.01 }).length, 2);
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});
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test("stragglers stay singletons by default; attachStragglers forces membership", () => {
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const dim = 6;
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const topic = axis(dim, 0);
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const vectors = {
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t1: near(topic, axis(dim, 1), 0.1),
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t2: near(topic, axis(dim, 2), 0.1),
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t3: near(topic, axis(dim, 3), 0.1),
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loner: axis(dim, 5), // orthogonal: fits nothing
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};
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const loose = semanticClusters(vectors);
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const looseLoner = loose.find((c) => c.members.includes("loner"));
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assert.equal(looseLoner?.members.length, 1, "default: loner is a straggler");
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assert.equal(loose.find((c) => c.members.length >= 3)?.members.length, 3);
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const allIn = semanticClusters(vectors, { attachStragglers: true });
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assert.equal(allIn.length, 1, "attach: the loner joins the nearest topic");
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assert.ok(allIn[0]!.members.includes("loner"));
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});
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test("members sorted; clusters ordered by size then id (deterministic)", () => {
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const dim = 4;
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const vectors = {
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solo: axis(dim, 3),
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p1: near(axis(dim, 0), axis(dim, 1), 0.05),
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p2: near(axis(dim, 0), axis(dim, 2), 0.05),
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q1: near(axis(dim, 1), axis(dim, 0), 0.05),
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q2: near(axis(dim, 1), axis(dim, 2), 0.05),
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};
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const a = semanticClusters(vectors);
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const b = semanticClusters(vectors);
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assert.deepEqual(a, b, "same input → identical partition");
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for (let i = 1; i < a.length; i++) {
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assert.ok(a[i - 1]!.members.length >= a[i]!.members.length, "size-descending");
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}
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for (const c of a) {
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assert.deepEqual(c.members, [...c.members].sort(), "members sorted");
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}
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});
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test("default threshold is the swept real-graph value", () => {
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assert.equal(SEMANTIC_SIM_THRESHOLD, 0.6);
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});
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});
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