Commit Graph
41 Commits
Author SHA1 Message Date
amosblomqvist 91341a93da digest-aware serialized extraction + chain simplification replace the spine stage
Owner live-test verdict on the spine (2026-09-30): no perceptible gain —
the real problems (restatement nodes, shallow re-derivations, same
conclusion from many angles) are mint-time issues a post-hoc chain
minter cannot fix. This arc moves assembly INTO the extractor and adds
the deterministic dedupe the owner specified:

- Digest-aware extraction: each stretch's extractor prompt carries THE
  GRAPH SO FAR (its own source's merged propositions + chains, ids
  verbatim); build on existing ids instead of restating, lean on
  established conclusions as premises. Mixed-namespace chain endpoints
  (fresh p-ids OR existing n_-ids) validated at the submit seam.
- Serialized per source: a source's batches/chunks run strictly in
  order (each extract reads every earlier merge); cross-source runs
  stay parallel; source-wide abort stops the loop. The spine stage,
  role, phase, usage stage, cost row, and setup roster are gone.
- Core-ideas prompt: goal reframed as uncovering core ideas and showing
  how everything derives from the foundations; direction upward, prefer
  lean derivations, never re-derive what the graph already holds.
- Chain simplification (merger maintenance): simplifyChains drops
  provably redundant chains at every merge — prefer-fewest-premises +
  ancestry-cover ([A,B]⟹X with [X,C]⟹Y covers [A,B,C]⟹Y, transitive);
  same-key provenance lines drop together; rewriteLedgers under the
  audit lock; droppedChains counted separately in stats.

Chunk budget stays 8192 (owner: keep for now, maybe lower later).
2026-09-30 17:44:37 +03:00
amosblomqvist 52c02533d1 extraction: the spine stage — cross-stretch assembly between extract and audit
Per-batch pipeline is now extract → spine → audit → merge (owner order,
2026-09-30), the spine inside the serialized audit section so it reads
the graph exactly as the following audit will. Measured motive: 0 of 133
chains in the live corpus crossed a stretch boundary — no stage minted
cross-stretch chains.

- src/agent/subagents/spine.ts: SESSION/NOTES spine preambles + shared
  SPINE_CORE (span doctrine; extraction doctrines carried over), the
  submit_spine TypeBox schema, validateSpine (mechanical span law: every
  chain touches >=1 fresh endpoint AND >=1 existing digest endpoint;
  unknown ids, self-reference, and id collisions are loud), the digest
  prompt builder, and the runner (strong tier, retry-only).
- extraction.ts: 'assembling' phase, spine stage in the per-need gate,
  usage/billing stage, assemble() inside withAuditLock for both front
  doors; first stretch of a source skips the call (empty digest, no
  spend); the audit sees COMBINED propositions (chunk + connectives),
  never chains; merger receives the combined findings.
- core/graph.ts mergeFindings: chain endpoints resolve through the
  job-local map OR pass through verbatim as existing n_ ids (the spine's
  mixed namespace).
- EXTRACTION_CORE: steps-of-reasoning selection bar (examples, notation
  glosses, and restatements that no argument needs are not steps).
- Factory chunk budget 4096 -> 8192 (fewer seams, more local context).
- healStringifiedArrays moved to the shared submit seam (submit-agent.ts).
- Cost panel: Assembly row; usage records carry a spine stage (optional
  on legacy records).
- Tests +5: prompt pins, span-law matrix, digest rendering, seeded
  end-to-end flow (spanning chain + connective, verbatim n_ endpoint,
  spine billed as its own stage), non-spanning refused + retried.
2026-09-30 16:38:45 +03:00
amosblomqvist 4985b6f9fa chains-primary: stored chains replace typed edges; edges become a derived view
Owner rulings 2026-09-30: reasoning chains are the stored truth; the graph
canvas renders a lossy derived image. No migration, no backcompat — old
graph data was wiped.

- contracts: GraphChain (arg_-minted id, premises, conclusion) replaces
  typed edges; GraphEdge survives only as the untyped derived arrow;
  GraphSnapshot carries stored chains; supports edges retired entirely
- store: chains.jsonl ledger (edges.jsonl purged at load alongside legacy
  events.jsonl); readChains/appendChain seam; merge dedupes by
  (sorted premises, conclusion), re-assertions append under the same arg_ id
- core: deriveView mints implication nodes (name ⟹, statement via
  formatChainLine) plus premise→imp→conclusion arrows; clusters stay
  proposition-only (birthSessionPartition); chainsForSelection now groups
  STORED chains (chain rides iff every member selected) — independent
  arguments for one conclusion never union; chainsToGraph/chainsToEdges die
- extraction: extractor submits chains natively (expandFindings deleted);
  auditor receives propositions only; supports fan-out gone
- deletion: full death of a proposition kills every referencing chain;
  arg_-prefixed node deletes kill that chain; chainsRemoved stats
- UI: every arrow renders the ⟹ double shaft; supports toggle + thickness
  slider and detail-card edge sections deleted (card keeps name +
  proposition); chain table + practice pipeline read stored chains
- tests: 1188 green across the new seams
2026-09-30 03:22:52 +03:00
amosblomqvist 00b3c23e06 practice slice 3A — runSubmitAgent extracted to shared module; practice model roles
runSubmitAgent moved verbatim from extraction.ts to src/agent/subagents/
submit-agent.ts (exported; extraction imports it — zero behavior change,
extraction suites green untouched). New optional prepareArguments seam:
extraction wires its healStringifiedArrays heal; default is identity
pass-through. ModelRole += partitioner | problemGenerator | grader;
ROLE_SLOT pins all three to strong (quality-critical trio, plan default).
Note: BACKGROUND_MODEL_ROLES (per-role settings overrides) deliberately
NOT extended — settings-surface decision, flagged for the planning
session.
2026-09-29 17:57:53 +03:00
amosblomqvist b7a19609cb practice slice 2 — store, paths, self-contained sets
Contract amendment (planning ruling): ProblemSet gains propositions
(nodeId → {name, statement}) and chains (the frozen derivation) — sets
are documents of what WAS selected; grading/dedup/coverage never touch
the live graph. config.ts PATHS.practice → data/practice/. PracticeStore
port (createSet assigns ps_<ts36>_<rand>, getSet, listSets createdAt-desc,
saveSet replace-whole, deleteSet). src/store/practice.ts: one JSON per
set, hand-written isProblemSet read guard (types-only; corrupt/missing →
null/skipped, never thrown; saveSet refuses invalid records). Wired in
src/server/stores.ts. 10-test suite: round-trip, corrupt-tolerance,
missing-dir, validator garbage-reject + optional-tolerate + verdict
union, ps_ id shape.
2026-09-29 17:53:36 +03:00
amosblomqvist 8355fbabdb delete the mappings ledger — per-job in-memory resolution + notes fingerprint guard
The persisted (chatId, sourceId)→node table was a shared namespace across
independent chunk/batch jobs: each chunk's extractor mints local ids fresh
(p1..pN), so later chunks collided with earlier ones — propositions silently
skipped as 'already resolved' (coverage checkpointed anyway: permanent silent
loss) and edges resolved onto the wrong nodes (the 'everything links to
everything' mush). Owner ruling 2026-09-29: mergeFindings resolves THIS job's
ids in memory, nothing persists between jobs; cross-job identity is the
auditor's linkTo verdicts alone.

- contracts: NodeMapping dies; NotesSource.contentFp — sha256 of the text at
  the last run, the re-import guard (unchanged re-import = TRUE no-op, no
  model calls, no usage; changed text re-runs; legacy unstamped sources
  re-run once)
- merger: job-local resolution map, in-submit duplicate ids skip once,
  edges resolve extractor-local ids only
- ports/store: appendMapping/readMappings, LEDGER_FILES.mappings,
  rewriteLedgers.mappings gone (stale data/graph/mappings.jsonl just stops
  being read)
- session-clusters: birthSessionOf is provenance-only — the legacy
  mapping-line fallback for provenance-empty notes nodes dies
- deletion: no mapping rows to strip; stats lose mappingsRemoved
- replay-layout batches nodes by first provenance point
- graph.test pins the new independence semantics (re-merge re-creates;
  duplicate ids within one submit resolve once); extraction tests pin
  per-chunk merges + the fingerprint guard
2026-09-29 02:25:32 +03:00
amosblomqvist 3e9a85d60f per-session models: every session owns its model + thinking level from birth
The reported bug (2026-09-28): every chat ran glm-5.3-flash regardless of
any pick, while composer and settings UIs agreed with each other and lied
about the run. Root cause: a fossil default-settings record (settings.json
chat section, frozen pre-slots-wave) was stamped verbatim into every new
chat at birth by the new-session flow, and resolveConversationSpec prefers
the per-chat record over the strong slot forever.

Owner redesign — models are per session, always; the strong slot is the
new-session default:

- POST /api/chats stamps the newborn verbatim from the strong slot
  (model + thinking level); no client settings PUT on create anymore
- the composer control is dual-bound: in-session it reads/writes the
  session's own record (GET /api/chats/:id, PUT .../settings); on the
  draft surfaces it binds the strong slot (picking there = changing the
  default)
- thinking levels follow the identical mechanics (confirmed by owner)
- the zombie default-settings system dies whole: useDefaultSettings,
  /api/settings/defaults, src/store/default-settings.ts, the chat
  section of UserSettings (sanitizer strips fossil copies), the legacy
  default-settings.json fold, and DEFAULT_SETTINGS_FILE
- catalogDefaultsFor collapses to the strong slot alone
- thinking display for a legacy unstamped session resolves exactly like
  the engine (session ?? strong ?? model ladder)

Tests: new chat-birth-stamp suite pins the stamp, the unconfigured boot,
the unset level, and the copy-not-live-view regression; defaults pins
rewritten strong-only; legacy-migration suite deleted.
2026-09-28 23:30:11 +03:00
amosblomqvist 1b50013551 extraction cleanup: events ledger dies, markdown source view, auditor-as-linker (2026-09-27 rulings)
The graph becomes raw reasoning chains only. Quiz outcomes and
understanding observations are no longer formalized; assessment
moves to the future practice module.

Events ledger removed end-to-end: LedgerEvent/LedgerEventKind/
UnderstandingLevel/ExtractionAttribution/AuditResult.dropped and
snapshot nodeObservations deleted from contracts; quizEvent builder
and the events step of mergeFindings gone; appendEvent/readEvents
dropped from the port and store; LEDGER_FILES loses events.jsonl
with a one-time purge of a stale file next to the nodes ledger;
graph-deletion and the delete dialog lose event purge + quiz-answer
impact counts; GraphSessionProposition becomes a pure birth list.

Whole-session markdown source view: new core/session-markdown.ts is
the shared formatting engine (id-anchored speaker blocks, quiz/
recall/question blocks, tool one-liners) — the extractor's prompt
view and the future user-facing export render from one engine.
Coverage fingerprints deliberately stay on the old line format
(content-hash semantics; re-formatting never re-opens covered
history). The whole session goes to the extractor — no phase cut.

Auditor refocused as the identity linker: never sees the source;
explores the graph via new auditor-specific tools in
agent/tools/graph.ts (find — glob over name/statement/aliases;
list_sessions; list_propositions with full statement text; no
timestamps) instead of an injected full-graph dump; equivalence
bias — paraphrases merge, only genuinely distinct propositions stay
apart; no drop channel, the extractor is fully trusted; may draw
bridging edges (typed follows/supports) between existing nodes and
the batch, resolved by the merger with chat-scoped message-less
provenance. Agentic loop, maxTurns 16.

UI: the node detail card gains an edges section above the sessions
list (follows-from / supported-by / what-follows / what-it-supports,
rendered only when present, click-to-select neighbors); the
understanding-note chips are gone.

Prober list_propositions reworded to what a session covered —
names only, no levels. docs/architecture.md + README updated to
the as-built pipeline. Gates: typecheck, 1059/1059, lint, build.
2026-09-28 16:54:44 +03:00
amosblomqvist 085fdc1a98 Payload slimming, pre-signing half: the asar stops shipping the world
The measured problem (330MB DMG / 1066MB app): electron-builder's
dependency collector packed the whole production dep tree into
app.asar (502MB) regardless of the files allow-list, because
normalizeFiles turns the array into one {filter} fileSet whose
entries ALL feed the per-dep copier (its implicit '**/*' passing
everything), and unpacked the native rungs into a 150MB
app.asar.unpacked. The launcher needs nothing but electron + node
builtins — the server ships via extraResources.

The fix (electron-builder.yml files): gitignore-style negation
ordering — '!**/*' first excludes everything, then only
electron/** and package.json re-include. The same list reaches the
per-dep filter, where app-builder-lib's destination-path quirk
(stat.moduleFullFilePath in util/filter.js) means no dep file can
ever re-include: all 566 modules collect zero files (DEBUG-mode
verified). Locale trim rides along (mac.electronLanguages: en).

Result on a fresh desktop:dist: app.asar 502MB -> 16KB (shell only:
electron/main.cjs, preload.cjs, package.json), app.asar.unpacked
gone, Frameworks 288MB -> 239MB, app 1066MB -> 367MB, DMG 330MB ->
144MB. Resources/server curation untouched (127MB, sharp native +
pdfjs traced and verified live).

Live verification against the packaged app: server spawn via
ELECTRON_RUN_AS_NODE on its kernel-assigned port, model slots via
PUT /api/settings/models, chat round-trip streaming an exact echo,
read tool on a PDF through the pdfjs path (exact text extracted),
image attach through the vision slot, GET /api/graph snapshot and
render-settings.

Docs full-accuracy pass (owner-approved scope): README +
docs/architecture.md swept of the dead embeddings / graph-context
injection / cluster-namer / semantic-clusters story (wave-7
casualties), MODELS/config roster rewritten to the BYOK slot
chain, EXTRACTION.chunkTokens -> graph.extractionChunkTokens,
route count 16 -> 25, steer_ctx_ dropped, seam table re-pointed at
the prober graph tools; docs/research/stt.md:50's "we already ship
transformers.js" premise corrected; config.ts orphaned EXTRACTION
doc block (left over from eed4b4e) deleted.

Note for master: npm prune still owed in the master tree (~690MB
stale @huggingface/onnxruntime trees absent from the lockfile);
worktree tree is clean and verified.
2026-09-24 20:50:52 +03:00
amosblomqvist 73027f49bf Cost channel cull: the cluster-naming fold dies — two stages, two channels
Off UI's d651f93 flag (displayCostTotals already isolates the display to
extraction + audit; the naming stage row and naming runs were filtered
out client-side). This culls the server side of the same ruling.

THE STANDING RULING, REVERSED BY ITS OWN PREMISE: NamingRunUsage /
readNamingRuns / appendNamingUsage were kept at the wave-7 namer kill
ONLY because cost-summary's HISTORICAL naming stage read them. With the
fold culled, that premise dies — so the whole ledger read path goes too,
following the wave-7 embeddings precedent chain: consumer-less ledger
seams are deleted, and the on-disk naming-runs.jsonl stays INERT (real
trees keep their historical spend bytes; they are simply not displayed
anywhere — the same treatment as historical stages.embedding spend).

- core/cost-summary.ts: two channels in (chat + notes front doors), two
  stages out; RecentRun.kind collapses to "extraction" (labels field
  gone); CostSummaryInput.naming gone; totalDollars = extraction + audit.
- ports/store/contracts/config: appendNamingUsage + readNamingRuns ports,
  store impls + guards, the NamingRunUsage interface, and
  LEDGER_FILES.namingRuns die. graphRevision no longer counts the file
  (a smaller revision value is harmless — reads never compare).
- components/graph-view.tsx (mechanical, flagged): the defensive
  .filter(run.kind !== "naming") guards a kind that no longer exists.
- Tests: cost-summary's both-channels fold pins; the naming fixtures and
  the appendNamingUsage store pin die with the seams.
2026-09-24 19:33:35 +03:00
amosblomqvist 2e9fd01c0c Extraction-UX data layer: the chunk budget becomes a graph setting; the chat view gets a per-session coverage read
Owner-locked extraction-UX redesign (dispatch 2026-09-24), part 1 (data
layer; the UI chunk follows).

THRESHOLD -> SETTING
- config.ts's EXTRACTION.chunkTokens dies; the default moves into
  FACTORY_SETTINGS.graph.extractionChunkTokens (4096, the old constant's
  value). GraphSettings gains the optional field, Required at resolution
  via the standard ?? FACTORY pattern — pre-redesign records resolve the
  default cleanly.
- FLOOR 500 (the implementer's call, documented on the field): every run
  pays the graph-carrying prompt overhead out of the write channel's
  money — a smaller budget fires penny-batches that cost more per
  extracted token than the content is worth. The sanitizer CLAMPS up
  (bd68486 clamp-never-reject discipline: fractions floor, junk drops);
  the settings PUT REJECTS below-floor with the rationale in the message.
  No ceiling: a large budget just delays extraction — the user's stated
  cost/thoroughness tradeoff, not a misconfiguration to police.
- The trigger (turn-service.triggerExtraction) takes the budget as a
  parameter — chat-handler passes effective.graph.extractionChunkTokens,
  the fresh per-turn read, same as every other gate.
- The pipeline's BATCH side threads through the same number:
  ExtractionPipelineDeps gains an OPTIONAL getChunkTokens getter with the
  factory default (Teacher's 24 test fixtures stay untouched; the two
  call-site lines inside extraction.ts are the only cross-band edits,
  flagged). chat-handler + backfill/import-notes wire the live
  effectiveSettings — trigger and batches share one budget, always.

PER-SESSION COVERAGE READ
- sessionCoverage(chatId) (server/chats.ts): the chat view's ring-meter
  block — totalMessages/coveredCount/uncoveredCount/coveredTokens/
  uncoveredTokens (the same coverageOf derivation /api/graph/coverage
  serves, scoped to one chat), running (chat-kind extraction registered
  for this id), and lastFoldedAt (the chat's newest coverage row's fold
  — a cheap single pass; null before any fold). GET /api/chats/[id]
  carries it as coverage: {...}; unknown chat -> null (the route 404s
  first).
- /api/graph/coverage (the all-sessions list) compiles untouched — the
  per-session read is a scoping of it, not a supersession; the UI's
  sidebar/ring chunk decides which surface it consumes.

Tests: factory/sanitizer pins (clamp-up, fraction-floor, junk-drop),
resolution pins (absent -> 4096, stored 2000 wins), settings-body pins
(valid/absent/fraction/below-floor 400/junk 400), sessionCoverage pins
(derived split, newest-fold scoping, cross-session isolation, running via
the registry, null on unknown chat). 893/893.
2026-09-24 15:12:24 +03:00
amosblomqvist d1b46132b9 Wave 7 close-out: the embedding ledger seam dies; notes birth via mapping lines
Part 1 — the ledger + remnants interlude (master-dispatched, owner ruling
2026-09-23: nothing configures the graph beyond chat models):

- The embedding ledger surface is gone: readEmbeddings/writeEmbeddings
  ports, the EmbeddingsLedger contract, EMBEDDINGS_FILE (config, store
  impls, graphRevision source list), and graph-deletion's vector-pruning
  step. On-disk data files stay untouched (inert history).
- The extraction embedder seam dies wholesale: ExtractionPipelineDeps
  drops the embedder dep (chat-handler + backfill/import-notes stubs go
  with it), the 'embedding' phase leaves ExtractionPhase, the usage
  capture/persist helpers die, and stages.embedding leaves
  ExtractionRunUsage (historical records keep their shape — reads are
  lenient). Extraction is two stages again, like the local-embedder era.
- Consumer-less remnants: latestQuizOutcomes + QUIZ_EVENT_KINDS,
  clusterContentId, matchClusterLabelings + Community + ClusterLabeling,
  the readClusterLabels/appendClusterLabel port seams + store impls +
  LEDGER_FILES.clusterLabels. NamingRunUsage/readNamingRuns STAY
  (standing ruling — the cost pill renders historical naming spend);
  clusterHue + MIN_CLUSTER_SIZE stay (live).
- The 'labeler' role dies: BACKGROUND_MODEL_ROLES, ROLE_SLOT, ModelRole,
  the catalog pin projections, and the UI roster strings. RolePins keys
  shrink with the union.

The notes birth fallback (owner-approved 2026-09-23, surfaced by the
interlude's live smoke: production notes imports create provenance-EMPTY
nodes (importNotes passes messages: null — the file's anchor is the
mapping line), so the provenance-only birth rule left every imported
file unclustered and invisible to the prober's session list, against the
locked file-birth ruling. A provenance-empty node now births under its
FIRST mapping line's chatId (ledger order); only notes-born nodes ever
hit the fallback (chat nodes always carry provenance; a re-encountered
node's link-append re-opens the provenance rule). Deletion-safe: mapping
lines of deleted chats are stripped alongside their provenance.

Live-verified on port 3004: a fresh notes import clusters under its
src_ id with the file path as the label, end to end with no embedder.

845/845 tests, typecheck/lint/build green.
EOF
)
2026-09-23 15:37:34 +03:00
amosblomqvist 0a4a9a11de BYOK provider embeddings (wave 6 chunk B): kill local transformers
Replace the @huggingface/transformers local embedder (~316MB ONNX cache)
with an EmbeddingPort seam: graph.embeddingModel (nullable "provider:id"
slug) selects an OpenRouter/OpenAI/Gemini adapter, resolved fresh per
call from settings + the auth store so key rotations land immediately.

- src/server/embeddings.ts rewritten: slug grammar, injected-fetch
  adapters (OpenRouter input_type, Gemini taskType batching, OpenAI
  index-ordered rows), honest resolution (null = skip-with-info, set
  model with missing key = honest error), embedNewNodes with model-change
  re-embed wipe + ghost pruning + usage steps, federated catalog
  (OpenRouter /api/v1/embeddings/models — VERIFIED live, the inverse
  path 404s; OpenAI text-embedding- filter; Gemini embedContent filter).
- GET /api/models/embeddings: federated catalog, empty when no keys.
- Extraction tail records stages.embedding usage into the run's money
  channel; EMBEDDING_PRICES overlay in core/prices.ts (outside the
  sync-generated block), callCost falls back to it; cost-summary folds
  the fourth stage; graph-context injection resolves its embedder per
  run, fails honestly when unconfigured, records query tokens.
- Settings: GraphSettings.embeddingModel (null factory), section parser
  validates slug shape (id may contain colons — OpenRouter :free
  suffixes, live catalog fact).
- Removal: @huggingface/transformers uninstalled, PATHS.modelCache and
  onnx tracing entries deleted, @huggingface tracing-excludes guard
  added, stale sharp/libvips comments updated to historical.

Live-verified on port 3004: catalog federates 36 rows (33 OpenRouter +
3 OpenAI), embedNewNodes embedded 10 nodes via the free liquid/lfm-2.5
model (dim 1024, 435 prompt tokens, 1 call, $0), settings PUT rejects
bad slugs with 400.

Gates: typecheck, lint, 895/895 tests, build.
2026-09-23 03:53:57 +03:00
amosblomqvist 9387418864 feat(models): clamp-on-write for pinned thinking levels + DEFAULT_THINKING_ORDER in the core barrel
Fix 1 — clamp, never reject (owner ruling, interlude 2026-09-22): a
model swap with a pinned thinking level must JUST WORK. The owner hit
the write-side 400 live (Claude Fable 5.1/xhigh → GLM 5.3 flash:
"z-ai/glm-5.3-flash does not support thinking level xhigh"). The
supported-level verdicts in validateChatSettings and
validateModelsSettings are DEAD — the WRITE clamps the pin to the new
model's nearest supported level (pi's clampThinkingLevel, the same
translation piEngineForSpec applies at runtime) and stores the clamped
result; the server is the truth — the record shows the clamped level
after write.

New pure helpers in model-catalog.ts, applied by ALL THREE write
routes (section, defaults, per-chat — one verdict seam, so every
surface that used the old 400 gets the clamp uniformly):
- clampModelsLevels: every slot's level clamps against the SLOT'S OWN
  model (the parser already requires a model on each slot write).
- clampChatLevel: the body's own model, else the record's resolved
  strong slot (the chain's fallback); no model anywhere → rides
  unchecked (runtime clamps at engine build; the turn gate refuses
  the model-less chat anyway).

Fix 2 — DEFAULT_THINKING_ORDER moves from config.ts to core/settings
(core barrel, AUTH_KEYS precedent — one source of truth, no drift).
The UI imports it to auto-populate a thinking level on FRESH model
picks; the ordering has no other client role. Legacy unset records
keep the runtime defaultThinkingLevel fallback at engine build
untouched. Import sites updated: agent/models.ts, tests.

Verified live on 3004: the owner's exact case stores max (not 400);
a bare chat-level write clamps to low against the strong slot's glm;
unknown provider/model still 400s with the provider list.

Tests: the level-verdict suites became clamp suites (the owner's case
pinned verbatim: xhigh→max, minimal→low, off→low, supported
pass-through, level-less slots ride); the machine-aware
expectBareLevelVerdict chain is retired — clampChatLevel takes the
strong slot as an explicit param, so the tests are pure again.

Gates: typecheck, lint, 839/839, build.
2026-09-22 21:44:43 +03:00
amosblomqvist bfa906e2f8 feat(models): BYOK all the way down — factory pins deleted, per-need refusal gates
Owner decision 2026-09-22: 'it doesn't make sense to have any default
model configured anywhere; the application is bring your own keys.'

config.ts: MODELS deleted; ModelRole becomes an explicit 9-role union;
DEFAULT_THINKING_ORDER (medium, low, high, minimal, xhigh, max) bakes
the unset-level default — first entry the model supports; explicitly
set levels keep pi's native nearest-clamp.

core/settings-resolution: the factory layer dissolves — the chain is
role override → slot → NOTHING. resolveSettings(record) takes no
factory. Empty chains resolve to null/undefined; a thinkingLevel-only
slot is inert (stored, never run). resolveConversationSpec: chat.model
override over the strong slot, null when both empty. resolveRoleSpec
spans all nine roles for the job/extraction engines.

Refusal envelope (core/settings.ts): modelsNotConfigured(missing) —
{error, code: 'models_not_configured', missing: [slot tiers]} +
ModelsNotConfiguredError with .envelope. Per-need gates, each honest:
- chat-handler: universal turn gate (new + continuing turns) returns
  503 before beginTurn — no liveness, no write-ahead persist, no graph
  trigger before the gate fires.
- runner.runJob: unresolvable engine lands the job as error with the
  envelope wording; no phantom loop, no result steer.
- extraction: refuseIfStagesUnconfigured throws before any stage
  (turn-service info-skips so coverage retries next turn; the import
  route surfaces per-file code+missing); labeler-less runs skip
  cluster naming with a console line and still merge.

Write side: slot entries must carry a model — level-only slot writes
are 400s (absent slot key = clear). piEngineForSpec resolves unset
thinking levels via DEFAULT_THINKING_ORDER; piEngineFor now throws
honestly; thinkingLevelFor/modelIdFor deleted; teacher-agent, pi-run,
visual-maker, pdf-reader all read engine.level.

model-catalog: defaults/slots/rolePins null when the chain is empty
(contracts nullable) — no phantom ids in payloads. Stores drop
MODEL_PINS entirely.

Tests: pin-leaners converted to explicit injection (per-chat model
pins on scripted chats — exactly what the setup flow writes; faux
engines for agent-construction tests). New coverage: the 503 gate
envelope, the runner refusal, the extraction refusal + labeler skip.

Gates: typecheck, lint, 815/815, build.
2026-09-22 16:59:16 +03:00
amosblomqvist f9e3a4c43d feat(models): strong/cheap/vision model slots + multi-provider engine federation
Model slots wave (2026-09-20), chunk B:

- settings: new `models` section {strong, cheap, vision} slots (each
  field independent, same shape as a role override); ROLE_SLOT maps all
  nine roles to tiers (strong=prober+teacher, cheap=researcher/
  demoBuilder/extractor/auditor/labeler, vision=visualMaker+pdfReader);
  resolution chain per role: override → slot → factory pin.
- config: ModelSpec gains provider (all pins openrouter, the BYOK
  default); MODEL_PINS in stores.ts now spans all nine roles (the strong
  slot's factory rep IS the prober pin).
- engine: piModels() registers EVERY builtin provider catalog;
  piEngineForSpec(resolved spec) is the new engine factory (pi-ai
  resolves per-provider keys from env itself); piEngineFor stays as the
  config-pin fallback. chat-handler resolves the conversation chain
  (chat override → strong slot → pin) and injects engineFor into the job
  runner, closing the old gap where per-role overrides never reached
  job engines.
- /api/models: models federate ONLY keyed providers (providers surface
  with keyPresent, env-wins, fresh per call); slots (resolved tier pins)
  join rolePins; catalogDefaultsFor inherits the strong slot; the models
  settings section gets the same catalog gate as chat.
- pricing: PRICES/CONTEXT_LIMITS uniformly keyed provider:id
  (regenerated from ALL pi-ai catalogs, 1354 keys); usage stamps
  (TurnUsage, JobUsage, extraction stages) switch to provider:id —
  owner decision: no legacy compat, old stamps render unpriced.
2026-09-22 00:14:56 +03:00
amosblomqvist a3b6a495d3 Merge branch 'feat/edge-glyph' 2026-09-19 22:39:03 +03:00
amosblomqvist 3e263a18cc Graph pipeline cost metrics: capture naming spend, fold all channels, cost pill + panel
- Cluster namer bills the money channel now: per-step usage + model
  captured via onStep, persisted as NamingRunUsage records to
  data/graph/naming-runs.jsonl (idempotent per startedAt; failed/aborted
  runs persist too — money spent either way). callUsage promoted to
  extraction.ts module scope for reuse.
- core/cost-summary.ts: the pure fold behind the pill — chat runs,
  notes-source runs, and naming runs into stage totals (extraction /
  audit / naming) + newest-first recent runs. Dollars INFERRED read-time
  via prices.ts, never stored; unpriced models excluded-but-counted
  (render '—', never a silent zero); tokens always sum.
- GET /api/graph/costs (src/server graphCosts composition, thin route).
- Graph view: bottom-left cost pill (cumulative dollars headline) +
  expandable breakdown panel (stage rows with tokens secondary, recent
  runs with time/title/merged/cost); fetched on mount, refetched when a
  pipeline run finishes; merged into one bottom-left stack with the
  running-pipeline pills.
- Tests: pure-fold suite, naming capture wiring (full importNotes ->
  naming path), store idempotency + strict reads.
2026-09-19 20:55:35 +03:00
amosblomqvist cbaf6df454 feat(keys): first-class BYOK key management — store, catalog, /api/keys
The auth/keys wave (2026-09-19): the server now owns the flat auth.json
map directly (LH_AUTH_FILE from main.cjs; repo-root auth.json in dev,
gitignored). The store reflects itself into the child's env at boot with
fill-gap precedence — real env (incl. .env.local in dev) always wins —
so every consumer keeps its plain process.env reads and saved keys take
effect immediately, no restart; main.cjs's spawn-time injection retired
(an env copy would shadow every settings-page change).

Curated 4-key catalog (OpenRouter, Deepgram, Google search pair) with
shape-only validation (no live pings — owner decision), 400s on bad
pastes, last-4+length masking (plaintext never leaves the store),
unknown file vars preserved + surfaced. Routes: GET /api/keys,
PUT/DELETE /api/keys/:id. Tests: catalog/store/composition, with the
env-sanitizing prologue (a dev shell may export real keys; tests use
throwaway values only).
2026-09-19 20:54:16 +03:00
amosblomqvist cb4fe25c89 wave 2 (platform stream): settings storage & plumbing foundation (P2)
- src/core/settings.ts: versioned DELTA record schema + sanitizer (unknown keys preserved)
  — general/chat/agent{models,tools,prompts}/appearance/graph sections
- src/core/settings-resolution.ts: pure resolveSettings (factory defaults → user delta),
  extraction/graph-context channel predicates
- src/store/settings.ts + prompt-overrides.ts: SettingsStore/PromptOverrideStore adapters
  wired through stores.ts (effectiveSettings() fresh per call); lazy migration of
  default-settings.json into record.chat
- app/api/settings/** routes (record, section bodies, prompt overrides per segment)
- chat-handler: graph gates at trigger call-sites + toolToggles injection seam
- config.ts: SETTINGS_FILE + PROMPTS_OVERRIDE_DIR paths

587/587 tests; typecheck/lint/build clean
2026-09-19 18:05:30 +03:00
amosblomqvist 9a90dd51d9 feat(T2b): sources v0 — read tool + pdf-reader sub-agent
Learner source files, on the teacher's own terms (nothing auto-injects):

- read tool (src/agent/tools/read.ts): pi-read port — path/offset/limit,
  2000-line/50KB truncation with use-offset continuation notices, image
  files (jpg/png/gif/webp/bmp) returned as native image content parts
  (new LhToolImageResult escape hatch in lh-tool.ts). Always-on in both
  the prober and teacher registries (user-decided 2026-09).
- pdf-reader sub-agent (JobKind 'pdf', toggleable, ack-and-steer): triage
  via pdf_info (pdfjs text layer: per-page text/image/math-density),
  targeted pdf_extract, regex pdf_search (hits count as consultation),
  and pdf_render — pages painted by pdfjs onto a canvas shim in headless
  Chrome (the pdfium viewer doesn't paint headless), screenshot fed back
  image-in-the-loop (visual-maker idiom, providerSafePng applied). The
  unread-finish gate bounces a zero-consultation brief once. Teacher gets
  a text brief with page citations only; renders never leave the loop.
- MODELS.pdfReader = qwen/qwen3.8-flash (user override 2026-09-19: the
  look-at-renders workload wants the vision-proven model; catalog listed
  glm-5.3-flash as image-capable but qwen is the known-good daily driver).
- UI: PdfCompleteBadge + PdfBriefCard (steer-card, job-card), dispatch
  card + activity-dock kind entries (type-forced, flagged for UI review).
- Prompts: 'Learner source files' section in teacher/30-jobs.md; read
  line in prober/10-probe-doctrine.md. Doctrine rides tool descriptions
  per the self-contained-tools principle.
2026-09-19 15:24:26 +03:00
amosblomqvist bc2c02b865 seam (master-approved): MODELS.pdfReader for the T2b pdf-reader sub-agent
One key, master pre-approved content (2026-09 master sync): the pdf-reader
is of the teacher/researcher family — dense image→text extraction wants the
stronger multimodal; qwen/qwen3.8-flash stays specialized for visualMaker
(generation). Owner can override in one line after live testing.
2026-09-19 15:00:10 +03:00
amosblomqvist bd3086194f feat: no baked-in default model — the new-session controls ARE the default settings page
Owner reframe (2026-09-18): the model + thinking + context controls on
the home graph view and /chat/new are not a draft overlay on a baked-in
default — they ARE the settings page for the default model, and the
user's last choice IS the default. BYOK first boot has no keys and
possibly no OpenRouter, so there is NO default to show: the controls
render 'no model' ('—') until the first pick.

The flash was the deeper symptom: the surfaces rendered from client
state that started empty and fetched truth afterward, so every visit
flashed the config pin (GLM/low — a dev artifact) for a few frames.
Fix at the root: both pages are now force-dynamic server components
that read the record (readDefaultSettings → initialSettings) and hand
it to the client — the first frame shows truth. Dynamic routes aren't
cached client-side (staleTimes.dynamic = 0), so every navigation
re-reads the record; the useDefaultSettings hook keeps only save-side
state (optimistic set + PUT). The GET-on-mount and its touch-guard are
gone.

ModelControl gains noDefaultModel (the default surfaces only): unset
settings render no model/level, never the catalog pin; the thinking
menu no-ops until a model exists. Chat surfaces keep the catalog
fallback — the engine runs the config pin when a session record has no
override, so the control keeps showing what will actually run.

Renamed draft→default throughout: data/default-settings.json,
GET/PUT /api/settings/defaults, useDefaultSettings. New sessions
still inherit the default on creation exactly as before.

Live-verified: first-boot 'no model' with zero flash, picker +
Shift+Tab cycle, values held across session→/chat/new→home roundtrips
and a reload (10×100ms samples, never the old default), zero console
errors.
2026-09-18 09:37:20 +03:00
amosblomqvist a94a108e74 feat: draft settings persistence — shared model/thinking/context record for the new-session surfaces
Both new-session pages (the home graph view's topic dock and /chat/new)
held their model + thinking + knowledge-context choices in plain
useState(undefined) — every navigation reset them to config defaults.

Now both surfaces read/write ONE server-side record
(data/draft-settings.json via GET/PUT /api/settings/draft, the
render-settings pattern): whatever the learner last left the controls on
is what every later visit shows. useDraftSettings loads on mount with a
touch-guard (a slow GET never clobbers a fast choice), saves
optimistically. Session creation still carries the choice into the new
chat exactly as before; per-session settings are untouched.

The PUT validation is the exact per-chat contract — parseSettingsBody
extracted verbatim from app/api/chats/[id]/settings and shared by both
routes (unknown model/level → 400 with the supported list, never a
silent clamp). 400s on garbage, {} = the clear-overrides write.

Live-verified: Cmd+K+Enter model pick, Shift+Tab thinking cycle, context
slider — all held across home → session → home → /chat/new, and carried
into a created session's record.
2026-09-18 09:25:40 +03:00
amosblomqvist 7902984bd6 feat: Electron desktop wrapper — LearnHarness.app (macOS arm64)
The web app becomes a desktop app without changing shape: the Electron
shell spawns the Next standalone server on a loopback port and points a
sandboxed window at it. All app logic stays in the Next server.

Bands:

1. LH_DATA_DIR seam (config.ts): PATHS.data/chats/graph derive from
   process.env.LH_DATA_DIR (else repo data/, unchanged in dev). New
   PATHS.modelCache routes the transformers.js embedding-model cache
   (~300MB) to <data>/models when the seam is set — the default cache
   inside node_modules is read-only in a packaged bundle. All existing
   fs writes flow through PATHS; teacherPrompt stays ROOT-anchored
   (read-only asset, ships inside the bundle by design).
   tests/data-dir-seam.test.ts covers set/unset via child process.

2. Standalone build (next.config.ts + scripts/build-server.mjs):
   output 'standalone'; outputFileTracingExcludes data/**/* keeps the
   repo's real session data out of the bundle (verified: an unexcluded
   scratch build traced 34 files / 716K of real chats + ledgers).
   Two empirically-verified tracer gaps required outputFileTracingIncludes:
   pi-ai's provider catalog (JSON import attributes — 39 files, 500s on
   /api/models without them) and onnxruntime-node's sibling dylib
   (libonnxruntime.dlopen via @rpath). build-server.mjs copies public/
   and .next/static per docs, refuses a leaked data/ dir, and asserts
   the runtime-read prompt .md assets are traced.

3. Electron shell (electron/main.cjs, no preload):
   - single-instance lock (two instances would fight over the data dir);
   - free port via listen(0); spawn via process.execPath +
     ELECTRON_RUN_AS_NODE=1 with PORT/HOSTNAME=127.0.0.1/LH_DATA_DIR;
   - BYOK: userData/auth.json, flat {VAR: value} JSON, mode 0600,
     merged into the child env only when absent from the real env
     (auth UI is the settings milestone; file is hand-editable);
   - poll until the server answers (no ready event), then open a
     contextIsolation+sandbox window; deny-by-default permission
     handler (media allowed only from the loopback origin — mic/STT
     groundwork); will-navigate pinned to origin, window.open denied
     with external links to the system browser; macOS Edit-menu roles;
   - quit path SIGTERM→3s→SIGKILL + exit/SIGHUP nets; child stdout
     mirrored to userData/logs/main.log;
   - dev mode via LH_DEV_URL: no spawn, points at next dev (HMR).

4. Packaging (electron-builder.yml + build/entitlements.mac.plist):
   files = electron shell only; the whole .next payload ships via
   extraResources from .next (filter standalone/**/*) — NOT from
   .next/standalone directly: electron-builder hard-excludes a copy's
   root node_modules and the default pattern is a literal match, so
   node_modules/ and .next/ were silently dropped and the server died
   with 'Cannot find module next'. Asar holds no native code.
   Unsigned (identity: null) until a Developer ID cert exists; hardened
   runtime + audio-input entitlements laid now for the STT milestone.
   desktop:dev / desktop:dist scripts (electron 44, electron-builder 26).

Live smoke of the packaged .app: server up on a random loopback port,
all API routes 200, a real GLM chat turn answered end-to-end via
auth.json BYOK, chat persisted under userData/data, second instance
exited via the lock, no orphaned server child after quit.

Gates: typecheck, eslint, 500/500 tests (+2 data-dir-seam), build.
2026-09-17 15:32:28 +03:00
amosblomqvist 2678f04e7a feat: extraction coverage — message-granular ledger + token-batched runs (d132373 vision)
THE MESSAGE IS THE UNIT OF COVERAGE (vision-extraction-coverage.md): a
per-chat append-only ledger (coverage.jsonl) records which messages the
pipeline has extracted, by content fingerprint over exactly what the
extraction view sees (one shared line builder — core/coverage.ts); the
uncovered remainder is DERIVED at read time, never dual-tracked. A quiz
answer merging into the asking message re-opens only that message;
plan-block data-part attach never re-opens anything.

- The trigger (turn-service) replaces every-3-quiz-answers with
  uncovered-tokens >= EXTRACTION.chunkTokens (4096) — quiz-less sessions
  extract too, content size is the honest signal.
- runExtraction is now chunked: token-budgeted batches of the oldest
  uncovered consecutive messages (a tool call + result never split), each
  merged batch checkpointing its messages' coverage atomically — an abort
  or error loses at most the in-flight batch; merged batches stay covered.
- Observation refs are batch-tagged (obs:<batchTag>:<sourceId>): re-runs
  of the same batch dedupe; a re-opened message's fresh understanding
  lands as a new event. Fixes the old obs:p1 position-collision.
- New API: GET /api/graph/coverage (exact per-session derived coverage +
  running flags, most-uncovered first) and POST /api/graph/coverage/extract
  (manual run for one session, 409 while in flight).
- Graph view chrome: the coverage button opens a panel with every
  session's covered/uncovered tokens and a per-session Extract button —
  the manual answer to aborted runs, errors, and dormant tails. Renders
  even when the graph is empty: an empty graph with uncovered sessions is
  exactly when it matters. Polls only while open.
- Notes imports keep the whole-file checkpoint path (coverage undefined).
- Tests: pure-core coverage suite (11), chunked-pipeline suite (3:
  multi-batch + no-op, abort-keeps-earlier-batches + remainder re-run,
  re-open alone + data-part invisibility), panel render suite (5);
  pendingQuizAnswers and its tests deleted as dead code. 486/486.

Live-smoked on real GLM: manual extract of "teach me modal realism" ran
one batch, wrote 4 coverage entries, panel flipped to "1.3k covered ·
complete" with the button disabled, graph refetched (nodes 11), usage
persisted with real stats.
2026-09-15 17:41:56 +03:00
amosblomqvist f5edc7f0a5 Semantic topic clusters: local embeddings replace Louvain
Louvain only ever found the reasoning chains (the graph is disconnected
by nature — every connected component became its own cluster) and
edge-orphans could never join anything. Clusters are now RELATED TOPICS:
propositions grouped by meaning.

- Embedder (src/server/embeddings.ts): in-process transformers.js v4
  running EmbeddingGemma-300M q8 (MTEB 68.4, ~300MB one-time download),
  MRL-truncated to 512d, "title: none | text:" prefix on 100% of inputs,
  L2-normalized so cosine = dot. Model/dim mismatch voids the ledger
  (full re-embed). Injected at the composition root — the agent layer
  never imports the server layer (architecture law).
- Ledger (data/graph/embeddings.json): model + dim + vectors + the
  persisted cluster partition. Reclustering runs at the END of every
  embedding batch (post-merge hook, both front doors) — never per read
  (the agglomerative pass is ~1.5s at 338 nodes).
- Clustering (src/core/semantic-clusters.ts): hand-rolled average-linkage
  agglomerative over cosine (npm HDBSCAN is an abandoned alpha). Stragglers
  stay singletons by default; attachStragglers is the all-in toggle.
  Threshold 0.60 swept on the real graph: 26 topics, 74/90 edge-orphans
  land in real topics, 10 stragglers.
- Consumers (snapshot, settle, namer, replay) read the persisted
  partition — one cluster concept everywhere; core-survival label
  matching unchanged (20/26 topics kept labels).
- Louvain retired: detectCommunities + graphology* deps deleted
  (graphology-louvain had leaked into the client bundle since the
  clusters wave); scripts/bench-graph.ts (dead FA2 bench) removed.
- scripts/embed-graph.ts: backfill/cold-start (338 nodes in 150s
  including the one-time model download).
2026-09-13 14:29:16 +03:00
amosblomqvist 0c14ea425d Option A: incremental anchored force layout, persisted server-side
The layout now EVOLVES instead of reshuffling on every extraction. A pure
core module (src/core/layout.ts) warm-starts forceAtlas2 from the positions
ledger (data/graph/positions.json, read-modify-write like sources.json,
updatedAt stamp for future live-physics conflict handling), re-blends every
previously-positioned node toward its anchor each iteration (retention 0.85
- old placements stay recognizable, strong forces still win), seeds new
nodes near their positioned neighbors, and seeds orphans on the rim outside
the core so they read as unconnected knowledge.

- Port/store: GraphStore.readPositions/writePositions; snapshot carries
  positions when the ledger exists (optional - fresh graphs unchanged).
- Extraction pipeline settles synchronously after every merge (chat and
  notes paths), before usage persist - the next /api/graph fetch already
  reflects new nodes.
- View: the ledger IS the layout; the local one-shot FA2 pass survives
  only as a fallback when no ledger exists.
- scripts/replay-layout.ts: simulates organic growth by replaying the
  current 338-node graph one imported file at a time (real import order,
  edges activate when both endpoints exist). Real run: 338 positions in
  0.3s, 90-degree-0 orphans collecting at mean r=338 vs connected r=194.
- Also restores the cluster region fills (hull background colors) that
  6692b19 had removed on a misreading of "no glow".

Live-verified: fit zoom derives from the ledger bbox, pickAt aligns with
ledger positions at every probe, hover/click/detail-card work, 408/408
tests, typecheck/lint/build green.

Future live physics stays cheap by design: the same pure function is the
merge-time settler and the future client simulator; a pinned node is just
an anchor with full retention.
2026-09-13 08:35:42 +03:00
amosblomqvist 8e2d2118a6 Graph view refinements: server-persisted settings, label size, eased zoom, resize-blank fix
Five refinements to the hand-rolled renderer, all user-directed:

1. Settings are SERVER-persisted (data/render-settings.json via new
   GET/PUT /api/graph/render-settings) - one source of truth for every
   browser, replacing localStorage. The client loads once after mount,
   saves debounced on user changes, and never lets a slow GET clobber a
   faster user (or mounting PUT defaults over the server copy). The
   shape/defaults/sanitizer moved to src/core/render-settings.ts - pure,
   shared by client, server store, and tests; every disk/network value
   passes through sanitizeRenderSettings.

2. New "Label size" control (default 12px - the previous hardcoded size).
   Font, wrap width, and line height all scale; verified live: +76k px
   with the label gate open.

3. "Labels until zoom" slider reworked: log-scaled over 0.0625-4 so the
   useful band (0.25-0.5 camera-ratio units) sits at 33%/50% of the
   track instead of crammed at the far left of the old linear 0.25-4
   slider. Display units are normalized: the default 0.5 reads as "1x",
   0.25 as "0.5x". The underlying labelZoom semantics are unchanged,
   so existing values survive.

4. Smooth wheel zoom: d3-zoom instant per-notch jumps (x1.2, bang) are
   replaced by an eased glide - wheel events accumulate a cursor-anchored
   target scale and each tick eases the camera toward it (exponential,
   120ms constant, frame-rate independent). Pan/pinch stay d3-owned; a
   pan cancels a glide in progress. Verified live: 8-frame glide.

5. Resize blanking fixed (graph vanished for the duration of a window
   drag, reappearing ~300ms after). Cause: every resize event
   reallocated the canvas backing store - which CLEARS it - and the
   redraw was deferred to rAF, which live resizes starve via relayout,
   so the canvas sat wiped for the whole drag. Fix: the ResizeObserver
   callback now redraws SYNCHRONOUSLY after reallocating (verified via
   a probe RO firing in the same delivery batch: canvas fully painted).
   kFit (the label gate 1x reference) is also recomputed on resize from
   the now-cached world bbox - the camera itself still persists.

tests/render-settings.test.ts: 10 tests pinning the sanitizer (garbage/
partial/clamps, legacy no-labelSize records) and the slider mapping
(default dead-center at 500, monotonic, exact round-trips, display
units). 402/402 green; typecheck, lint, build pass.
2026-09-13 05:56:27 +03:00
amosblomqvist f0267a5fd9 Clusters phases B+C: labeling records, the naming call, snapshot payload
Core-survival labelings (vision section 1, DECIDED 2026-09-13):
ClusterLabeling records in a new append-only ledger
(data/graph/cluster-labels.jsonl), immutable, id = clu_ + sha256 of the
sorted core so re-naming races and re-runs dedupe at the store seam.
matchClusterLabelings (core/clusters.ts, pure): a community keeps a
record's label while at least half its core survives in it; both sides
single-successor (a split keeps one name; greedy by overlap, ties to
the newer record).

The namer (src/agent/subagents/cluster-namer.ts): ONE singular cheap LLM
call (new 'labeler' role, glm-flash/low) names every new/changed
community at once, given member names + statements (capped at 12
members per cluster). refreshClusterLabels runs POST-EXTRACTION
(user-decided) from both front doors, fire-and-forget — naming failure
never fails the run; refreshes serialize behind a chain so parallel
imports never mint duplicate labels. import-notes.ts awaits
clusterNamingSettled before exit.

Payload: GraphSnapshot.clusters (>= MIN_CLUSTER_SIZE 3) joins detection
with labelings at read time — claimed clusters carry the record's label
and id; unlabeled ones carry a member-hash id and null label. Detection
is deterministic so no memo in v1 (ms at current scale; revisit at
vault scale).

Tests (372/372): matcher half-rule/split/merge/greedy/tie cases; naming
end-to-end through importNotes (one call, one record, claim on
re-refresh), naming failure non-fatal; snapshot derivation with
labeling join; 11 test pipelines now pin an explicit labeler seam.
2026-09-13 03:59:48 +03:00
amosblomqvist 543cf33789 Notes front door: format-agnostic import into the graph pipeline
The same extractor→auditor→merger pipeline now runs over raw personal
notes in arbitrary formats (vision §1, DECIDED 2026-09-13):

- NotesSource records (data/graph/sources.json, deterministic id from
  path hash → idempotent re-imports) play the chatId role in mappings,
  checkpoints, and observation events; usage lands on the source record
  (appendSourceUsage, idempotent per startedAt, kept across upserts).
- mergeFindings is chat-store-free: callers pass MergeSource
  {messages, foldedAt} — sessions pass the chat record, notes pass
  messages:null (no quiz-event rebuild; a deterministic rebuild needs
  structured quiz tool parts).
- Second extractor prompt (NOTES_EXTRACTOR_INSTRUCTIONS) for general-
  purpose extraction; understanding judges the AUTHOR's grasp. Auditor
  wording input-agnostic. extract/audit share one generic runSubmitAgent.
- graphSnapshot.fileSources (srcId→filePath); notes sources render as
  static path entries in the detail card (FileTextIcon, never a link).
- One shared pipeline instance (exported from chat-handler): same
  single-flight registry, live status chips (label = file path), usage
  accounting, and true abort for both front doors.
- Transport: POST /api/graph/import (multipart, 3-wide worker pool) +
  Import notes… button in the graph view; scripts/import-notes.ts for
  batch runs (concurrency 4).
- real-data-extraction/ gitignored (raw import sources never committed).

355/355 tests; typecheck, lint, build green.
2026-09-13 02:08:55 +03:00
amosblomqvist de0c286311 feat: model + thinking control — the stats bar's picker, on pi-ai's catalog
The model-control wave (user-decided design, 2026-09-12): ONE controller
for the conversation agents (prober/teacher are functionally one agent);
background sub-agents stay config-pinned. pi-ai owns the registry — the
shipped 366-model OpenRouter catalog (cost, context, modality,
thinkingLevelMap), getSupportedThinkingLevels/clampThinkingLevel for the
per-model thinking truth, and streamSimple's automatic clamp. No second
registry to drift out of sync.

Seams:
- config.ts: ReasoningEffort retired for pi's ThinkingLevel
  (off|minimal|low|medium|high|xhigh|max). GLM roles go honest at "low" —
  pi's catalog says GLM-5.3-flash accepts exactly low|high|max, and the old
  "minimal" was silently clamped to low by streamSimple since the swap;
  nothing changes behaviorally. visualMaker → qwen/qwen3.8-flash (fixes
  the dead qwen/qwen3.8-max slug — the catalog only ships -0902; also the
  user's cost pick, 0.15/0.47 per-1M).
- src/agent/models.ts: piEngineFor(role, settings?) — provider+id resolved
  from the catalog, thinking level from settings ?? config, CLAMPED to the
  model's supported list (a settings change between models can never send
  an invalid level). PiEngine gains `level` (observability/tests).
- ChatRecord.settings {model?: {provider, id}, thinkingLevel?} — written
  by PUT /api/chats/[id]/settings (replace-whole, no updatedAt churn),
  read by chat-handler at turn composition: agents are stateless per turn,
  so the change is next-turn-effective by construction. The turns log
  still records the ACTUAL billed model (the honest witness).
- GET /api/models: the configured-provider catalog as client-safe DTOs
  (core/contracts/models.ts) + config defaults; a second provider joins
  the picker by registering it in piModels() — nothing else changes.
- PUT settings validation gate (src/server/model-catalog.ts): unknown
  provider/model or unsupported level → 400 carrying the supported list,
  never a silent clamp.
- scripts/sync-pricing.ts: regenerated PRICES/CONTEXT_LIMITS from pi-ai's
  shipped openrouter.json (offline; same source as the engine + picker).
  All 366 models priced; glm's stale 0.15/0.5 → pi's 0.075/0.25, limit
  1310720 → 1048576 — cost is inferred at read time, so history re-prices.
- UI (components/model-picker.tsx): stats-bar right side becomes model +
  thinking buttons; menus open ABOVE; fuzzy search over "provider id
  name" (core/fuzzy.ts — pi's /model pattern); model rows show name/id/
  price/context; the thinking menu lists exactly the chosen model's
  supported levels (GLM: low|high|max — no dead options, no "off").
  Model switch drops an incompatible pinned level (falls back to config,
  which clamps honestly) rather than carrying a 400.

Tests (350/350, +15): catalog projection + defaults, the settings gate,
pi thinking truth pinned against upgrades (glm low|high|max; minimal→low;
off→low — GLM cannot disable thinking), the engine factory's
override/fallback/clamp/throw matrix, fuzzy ranking, store round-trip,
and the re-priced folds (usage, stats bar, activity dock).

Live smoke (disposable driver, deleted): catalog route 366 + defaults;
glm+minimal → 400 + supported; turn 1 billed qwen/qwen3.8-flash under
the override; mid-session switch flipped turn 2 to glm; clear-overrides
restored the config pin. ALL CHECKS PASS on real OpenRouter.
2026-09-12 06:02:40 +03:00
amosblomqvist 5653c77a29 feat: probe/teach agent split — explicit phase markers, position-only plan map
Diagnosis (2026-09-11 user testing, minimal-effort GLM): sessions stuck on
'plan' forever. Two causes: (1) the three-phase view read the stored tree's
currentNodeId, which nothing ever writes post author-once (2026-09-03) — a
structural dead seam; (2) the teacher stochastically left quiz.nodeId
untagged, and done-by-quiz-result semantics would have falsely completed
nodes anyway.

The redesign (docs/probe-teach-split.md) abolishes derived occupancy in
favor of explicit events:

- Two agents over one transcript: createProberAgent (quiz without a
  nodeId field, ask, probe_done) and createTeacherAgent (full toolset,
  plan_init onward). The chat-handler construction branch keys on a
  probe_done part in the transcript. MODELS.prober added.
- probe_done: server-side seam tool — carries the learner assessment
  (strands + free-form edge read), refuses while a question is open or
  the probe is already concluded, and queues a handoff steer through the
  generalized wake pipeline (steers now dedupe by id, not jobId; job
  finalization only for job steers). The teacher auto-wakes and authors
  the plan; the learner sees the assessment via the probe-done card.
- phases: probe ends at a concluded probe_done, plan ends at a
  successful plan_init — strictly sequential, no skipping, no legacy
  compatibility (data wiped at the pivot per doctrine).
- Plan map = position, not completion: derivePlanStatuses reads only
  tagged quiz CALLS (state/outcome feed nothing); current = latest
  tagged node with consecutive duplicates collapsed, visited = earlier
  distinct stays (a revisit stays in both — current wins at render).
  PlanTree is structure-only; currentNodeId/doneNodeIds and the dead
  mutation helpers are gone. No fallback current.
- Prompts split per agent (prompts/prober/, prompts/teacher/ over the
  trimmed shared base); graph-context injection removed entirely
  (shelved, docs/probe-teach-split.md §5); knowledge-graph context no
  longer reaches either agent.
- Plan blocks are full-only snapshots at plan_init (neighborhood
  machinery retired; the persistent DAG window is the future UI wave);
  usage capture unchanged.

Gates: tsc clean, 294/294 tests (phases/plan-tree/plan-blocks/question-
tools rewritten to the new semantics; probe-done + handoff-wake tests
added), lint, build. Live GLM smoke PASS: prober concluded with an honest
assessment, teacher auto-woke, authored a 10-node plan with the block
attached, then tagged checks on slope-instinct → secant derived current/
visited exactly as designed; grading honest both ways (driver off-by-one
proved a wrong answer grades false).
2026-09-11 06:44:20 +03:00
amosblomqvist be4d6d8de8 config: reasoning effort minimal across teacher/researcher/demoBuilder/visualMaker 2026-09-09 06:46:22 +03:00
amosblomqvist d8324ca9bb Visual maker model: qwen3.8-max (vision-capable, cheaper) 2026-09-02 18:42:25 +03:00
Amos 59fc2ef863 Centralized model config (config.ts MODELS) + extraction seam logging
MODELS in config.ts is now THE single tuning table: model id + OpenRouter
reasoning effort for teacher/researcher/demoBuilder/visualMaker/extractor/
auditor. .env.local is secrets-only (LH_* model vars removed; all sub-agents
previously had NO reasoning setting -> provider-default unbounded thinking,
the extraction token burn). One factory (src/agent/models.ts modelFor) wires
all six call sites; test injection unchanged. EXTRACTION.everyNQuizAnswers
moved to a config literal too. Plus the §5 one-line-per-seam logging in the
extraction pipeline: pipeline start, extractor/auditor start + per-step,
audit kept, merged — previously silent until completion, which made live
runs look like they never fired.
2026-09-01 01:47:47 +03:00
Amos af90fadcda Extraction pipeline: extractor → auditor → merger — the sole graph writer (stage 5)
The knowledge graph's write channel is now the pivot's target
architecture (vision §1 construction):

- src/agent/subagents/extraction.ts — the pipeline factory
  (createExtractionPipeline({ chatStore, graphStore, extractor?,
  auditor? }); models env LH_EXTRACT_MODEL ?? LH_MODEL):
  * transcriptView(): the compact view both LLM stages see — final plan
    tree with node ids, conversation verbatim, QUIZ lines with outcomes,
    mark_done lines; job tool parts are one-liners, plan ops fold into
    the tree line.
  * Extractor: transcript → SessionFindings (propositions incl.
    misconceptions and prose-only supports edges, attribution for
    UNTAGGED probes, all with verbatim evidence) via one zod-validated
    submit_findings call.
  * Auditor: transcript + findings → the verified subset + drops (the
    faithfulness net) via submit_review.
- src/core/graph.ts — emitChat/foldStaleChats/replayFinalTree retire;
  mergeFindings() replaces them as the pipeline's deterministic apply
  stage: exact/alias identity resolution (one mapping line per (chat,
  graph node)), edge dedupe, and event rebuild FROM THE TRANSCRIPT's tool
  parts — kinds/timestamps/refs/notes deterministic, the LLM's only event
  say being WHICH proposition an untagged probe tested (retroactive —
  the vision's open question #3, resolved structurally: tagged events
  resolve deterministically; attribution rescues untagged and
  tagged-but-unmapped ones; unattributable land null + question text).
  pendingQuizAnswers() is the trigger helper.
- Trigger (turn-service.ts triggerExtraction, replacing the old
  foldTurnIntoGraph body): once a chat accumulates
  EXTRACTION.everyNQuizAnswers (LH_EXTRACT_N, default 3) new answered
  quizzes, fire the pipeline async — single-flight per chat, failure
  checkpoints nothing and re-runs on the next trigger. Deliberately a v1
  placeholder isolated in ONE seam, trigger-agnostic pipeline.
- GET /api/graph is now a pure read (foldStaleChats gone).
- NodeMapping.treeNodeId → sourceId (the mapping key is now the writer's
  local proposition id — tree node when tree-derived); store strict-read
  schema updated. Local ledger data regenerates through the pipeline.
- Tests: graph.test.ts rewritten around mergeFindings (identity,
  attribution paths incl. ghost-rescue, idempotency, cross-session
  provenance, trigger counting), graph-context.test.ts merge section
  converted to findings-driven, NEW extraction.test.ts — transcriptView
  units + the full pipeline with mock models (audit drops, failure
  checkpoints nothing, single-flight). 195/195, tsc/eslint/build clean.

Probe attribution (vision open question): probes attach retroactively by
the extractor against the whole transcript; a pre-tree probe maps to a
proposition the tree only articulates later. Fuzzy/embedding merge
adjudication stays deferred (conservative exact/alias only).
2026-08-31 22:36:41 +03:00
Amos bfb31568fc Purge legacy pre-pivot scaffold (decided: extractor/merger-only architecture)
Delete src/extract/ (pi-session normalize/extract/merge stubs), src/ledger.ts,
src/schema.ts, src/derive.ts, src/queries/, src/cli.ts (npm run ingest/graph/
what-next), data/legacy-graph/, data/agent/ (pi agentDir vestige), and their
config.ts/package.json references.

The retroactive-bootstrap goal is dropped: the live chat store (AI SDK
UIMessages) is the only session format now, and the old pi JSONLs in
data/sessions/ stay on disk, inert. contracts.ts is the single schema.
2026-08-31 19:35:20 +03:00
Amos ded163aa3f Repoint legacy V0 scaffold to data/legacy-graph — the live store owns data/graph exclusively 2026-08-22 10:11:58 +03:00
Amos a72c902d30 v3: AI SDK pivot — pi removed, Next.js 16 + AI SDK 7 + AI Elements teacher app
The teaching agent no longer runs on pi. Stack:
- ToolLoopAgent (ai@7) + OpenRouter (OPENROUTER_API_KEY), model via LH_MODEL,
  default anthropic/claude-sonnet-4.5 with reasoning tokens
- quiz/ask_user_question = client-side tools (no server execute): the call
  lands as a typed tool part in input-available state; the card grades via
  src/core/question-core.ts; addToolOutput sends the verdict; the teacher's
  reaction continues the same assistant message
- resume-mid-quiz is free: the pending tool part persists in the transcript
- persistence: one JSON per chat (data/chats/), full UIMessage transcripts,
  saved onFinish (also on abort)
- UI: AI Elements (owned copy-paste components, pruned to the five in use)
  + button-based QuizCard/AnsweredCard (ask answers never graded)
- pi fully removed: TUI, extensions, Fastify+WS server, bridge, custom
  protocol all deleted (recoverable from git history)
- tests: question-core units carry over; chat-flow integration drives
  handleChatRequest with MockLanguageModelV4 (48 tests, zero tokens);
  render smoke tests guard the cards (renderToStaticMarkup)

Carried over unchanged: teacher system prompt, question-core, schema/
ledger/derive/extract pipeline, data model.
2026-08-22 02:18:27 +03:00
Amos 9a6af9697f v0 scaffold: teacher runtime (hermetic pi SDK), data model, ledgers, normalizer
- teacher/system-prompt.md: teach methodology + quiz/ask guidelines folded in
- extensions/: quiz.ts + ask-user-question.ts (hermetic copies)
- src/teacher/create-session.ts: isolated agent (noTools builtin, own agentDir/sessions/prompt)
- src/schema.ts + ledger.ts: append-only ledgers, known-vs-understood data model
- src/extract/normalize.ts: session JSONL -> canonical doc (verified on real session)
- extractor/merger/derive/what-next: specified stubs
2026-08-21 21:37:28 +03:00